Added endpoints

This commit is contained in:
Benoy Bose 2024-12-13 18:17:45 +05:30
parent 74ef778585
commit cbee21dae7
19 changed files with 980 additions and 19 deletions

400
.gitignore vendored
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@ -1,3 +1,403 @@
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@ -1,13 +0,0 @@
using Microsoft.AspNetCore.Mvc;
namespace SimpleLIS.Controllers;
[ApiController]
[Route("messages")]
public class MessageController : Controller
{
public IActionResult Index()
{
return View();
}
}

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using AutoMapper;
using Microsoft.AspNetCore.Mvc;
using SimpleLIS.DTO;
using SimpleLIS.Models;
using SimpleLIS.Services;
namespace SimpleLIS.Controllers;
[ApiController]
[Route("api/messages")]
public class MessagesController : ControllerBase
{
private readonly MessageService _messageService;
private readonly IMapper _mapper;
public MessagesController(MessageService messageService, IMapper mapper)
{
_messageService = messageService;
_mapper = mapper;
}
[HttpPost]
public async Task<IActionResult> CreateMessage([FromBody] MessageDTO messageDto)
{
if (!ModelState.IsValid) return BadRequest(ModelState);
var message = _mapper.Map<Message>(messageDto);
var createdMessage = await _messageService.CreateMessageAsync(message);
var createdMessageDto = _mapper.Map<MessageDTO>(createdMessage);
return Ok(createdMessageDto);
}
[HttpGet("{id}")]
public async Task<IActionResult> GetMessage(int id)
{
var message = await _messageService.GetMessageByIdAsync(id);
if (message == null) return NotFound();
var messageDto = _mapper.Map<MessageDTO>(message);
return Ok(messageDto);
}
[HttpGet]
public async Task<IActionResult> ListMessages()
{
var messages = await _messageService.ListMessagesAsync();
var messagesDto = _mapper.Map<IEnumerable<MessageDTO>>(messages);
return Ok(messagesDto);
}
// PUT: api/Messages/{id}
[HttpPut("{id}")]
public async Task<IActionResult> UpdateMessage(int id, [FromBody] MessageDTO messageDto)
{
if (!ModelState.IsValid) return BadRequest(ModelState);
if (!await _messageService.MessageExistsAsync(id))
{
return NotFound();
}
var message = _mapper.Map<Message>(messageDto);
message.MessageId = id; // Ensure the correct ID is used
var updatedMessage = await _messageService.UpdateMessageAsync(message);
var updatedMessageDto = _mapper.Map<MessageDTO>(updatedMessage);
return Ok(updatedMessageDto);
}
// DELETE: api/Messages/{id}
[HttpDelete("{id}")]
public async Task<IActionResult> DeleteMessage(int id)
{
var deleted = await _messageService.DeleteMessageAsync(id);
if (!deleted) return NotFound();
return NoContent();
}
}

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@ -0,0 +1,80 @@
using AutoMapper;
using Microsoft.AspNetCore.Mvc;
using SimpleLIS.DTO;
using SimpleLIS.Models;
using SimpleLIS.Services;
namespace SimpleLIS.Controllers;
[ApiController]
[Route("api/observations")]
public class ObservationsController : ControllerBase
{
private readonly ObservationService _observationService;
private readonly IMapper _mapper;
public ObservationsController(ObservationService observationService, IMapper mapper)
{
_observationService = observationService;
_mapper = mapper;
}
[HttpPost]
public async Task<IActionResult> CreateObservation([FromBody] ObservationDTO observationDto)
{
if (!ModelState.IsValid) return BadRequest(ModelState);
var observation = _mapper.Map<Observation>(observationDto);
var createdObservation = await _observationService.CreateObservationAsync(observation);
var createdObservationDto = _mapper.Map<ObservationDTO>(createdObservation);
return Ok(createdObservationDto);
}
[HttpGet("{id}")]
public async Task<IActionResult> GetObservation(int id)
{
var observation = await _observationService.GetObservationByIdAsync(id);
if (observation == null) return NotFound();
var observationDto = _mapper.Map<ObservationDTO>(observation);
return Ok(observationDto);
}
[HttpGet]
public async Task<IActionResult> ListObservations()
{
var observations = await _observationService.ListObservationsAsync();
var observationsDto = _mapper.Map<IEnumerable<ObservationDTO>>(observations);
return Ok(observationsDto);
}
[HttpPut("{id}")]
public async Task<IActionResult> UpdateObservation(int id, [FromBody] ObservationDTO observationDto)
{
if (!ModelState.IsValid) return BadRequest(ModelState);
if (!await _observationService.ObservationExistsAsync(id))
{
return NotFound();
}
var observation = _mapper.Map<Observation>(observationDto);
observation.ObservationId = id;
var updatedObservation = await _observationService.UpdateObservationAsync(observation);
var updatedObservationDto = _mapper.Map<ObservationDTO>(updatedObservation);
return Ok(updatedObservationDto);
}
[HttpDelete("{id}")]
public async Task<IActionResult> DeleteObservation(int id)
{
var deleted = await _observationService.DeleteObservationAsync(id);
if (!deleted) return NotFound();
return NoContent();
}
}

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@ -0,0 +1,80 @@
using AutoMapper;
using Microsoft.AspNetCore.Mvc;
using SimpleLIS.Models;
using SimpleLIS.Services;
namespace SimpleLIS.Controllers;
[ApiController]
[Route("api/patients")]
public class PatientsController : ControllerBase
{
private readonly PatientService _patientService;
private readonly IMapper _mapper;
public PatientsController(PatientService patientService, IMapper mapper)
{
_patientService = patientService;
_mapper = mapper;
}
// POST: api/Patients
[HttpPost]
public async Task<IActionResult> CreatePatient([FromBody] PatientDTO patientDto)
{
if (!ModelState.IsValid) return BadRequest(ModelState);
var patient = _mapper.Map<Patient>(patientDto);
var createdPatient = await _patientService.CreatePatientAsync(patient);
var createdPatientDto = _mapper.Map<PatientDTO>(createdPatient);
return Ok(createdPatientDto);
}
[HttpGet("{id}")]
public async Task<IActionResult> GetPatient(int id)
{
var patient = await _patientService.GetPatientByIdAsync(id);
if (patient == null) return NotFound();
var patientDto = _mapper.Map<PatientDTO>(patient);
return Ok(patientDto);
}
[HttpGet]
public async Task<IActionResult> ListPatients()
{
var patients = await _patientService.ListPatientsAsync();
var patientsDto = _mapper.Map<IEnumerable<PatientDTO>>(patients);
return Ok(patientsDto);
}
[HttpPut("{id}")]
public async Task<IActionResult> UpdatePatient(int id, [FromBody] PatientDTO patientDto)
{
if (!ModelState.IsValid) return BadRequest(ModelState);
if (!await _patientService.PatientExistsAsync(id))
{
return NotFound();
}
var patient = _mapper.Map<Patient>(patientDto);
patient.PatientId = id;
var updatedPatient = await _patientService.UpdatePatientAsync(patient);
var updatedPatientDto = _mapper.Map<PatientDTO>(updatedPatient);
return Ok(updatedPatientDto);
}
[HttpDelete("{id}")]
public async Task<IActionResult> DeletePatient(int id)
{
var deleted = await _patientService.DeletePatientAsync(id);
if (!deleted) return NotFound();
return NoContent();
}
}

33
DTO/MessageDTO.cs Normal file
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@ -0,0 +1,33 @@
namespace SimpleLIS.DTO;
public class MessageDTO
{
public int MessageId { get; set; }
#pragma warning disable CS8618 // Non-nullable field must contain a non-null value when exiting constructor. Consider adding the 'required' modifier or declaring as nullable.
public string ControlId { get; set; } // Unique identifier for the HL7 message
#pragma warning restore CS8618 // Non-nullable field must contain a non-null value when exiting constructor. Consider adding the 'required' modifier or declaring as nullable.
#pragma warning disable CS8618 // Non-nullable field must contain a non-null value when exiting constructor. Consider adding the 'required' modifier or declaring as nullable.
public string MessageType { get; set; } // Type of HL7 message (e.g., ORU^R01)
#pragma warning restore CS8618 // Non-nullable field must contain a non-null value when exiting constructor. Consider adding the 'required' modifier or declaring as nullable.
#pragma warning disable CS8618 // Non-nullable field must contain a non-null value when exiting constructor. Consider adding the 'required' modifier or declaring as nullable.
public string SendingApp { get; set; } // Sending application
#pragma warning restore CS8618 // Non-nullable field must contain a non-null value when exiting constructor. Consider adding the 'required' modifier or declaring as nullable.
#pragma warning disable CS8618 // Non-nullable field must contain a non-null value when exiting constructor. Consider adding the 'required' modifier or declaring as nullable.
public string SendingFacility { get; set; } // Sending facility
#pragma warning restore CS8618 // Non-nullable field must contain a non-null value when exiting constructor. Consider adding the 'required' modifier or declaring as nullable.
#pragma warning disable CS8618 // Non-nullable field must contain a non-null value when exiting constructor. Consider adding the 'required' modifier or declaring as nullable.
public string ReceivingApp { get; set; } // Receiving application
#pragma warning restore CS8618 // Non-nullable field must contain a non-null value when exiting constructor. Consider adding the 'required' modifier or declaring as nullable.
#pragma warning disable CS8618 // Non-nullable field must contain a non-null value when exiting constructor. Consider adding the 'required' modifier or declaring as nullable.
public string ReceivingFacility { get; set; } // Receiving facility
#pragma warning restore CS8618 // Non-nullable field must contain a non-null value when exiting constructor. Consider adding the 'required' modifier or declaring as nullable.
public DateTime Timestamp { get; set; } // Message creation time
#pragma warning disable CS8618 // Non-nullable field must contain a non-null value when exiting constructor. Consider adding the 'required' modifier or declaring as nullable.
public string Version { get; set; } // HL7 version
#pragma warning restore CS8618 // Non-nullable field must contain a non-null value when exiting constructor. Consider adding the 'required' modifier or declaring as nullable.
// Associated Observations
#pragma warning disable CS8618 // Non-nullable field must contain a non-null value when exiting constructor. Consider adding the 'required' modifier or declaring as nullable.
public List<ObservationDTO> Observations { get; set; }
#pragma warning restore CS8618 // Non-nullable field must contain a non-null value when exiting constructor. Consider adding the 'required' modifier or declaring as nullable.
}

21
DTO/ObservationDTO.cs Normal file
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@ -0,0 +1,21 @@
namespace SimpleLIS.DTO;
public class ObservationDTO
{
#pragma warning disable CS8618 // Non-nullable field must contain a non-null value when exiting constructor. Consider adding the 'required' modifier or declaring as nullable.
public string ObservationCode { get; set; } // Code identifying the observation (e.g., WBC, HGB)
#pragma warning restore CS8618 // Non-nullable field must contain a non-null value when exiting constructor. Consider adding the 'required' modifier or declaring as nullable.
#pragma warning disable CS8618 // Non-nullable field must contain a non-null value when exiting constructor. Consider adding the 'required' modifier or declaring as nullable.
public string ObservationValue { get; set; } // The observed value
#pragma warning restore CS8618 // Non-nullable field must contain a non-null value when exiting constructor. Consider adding the 'required' modifier or declaring as nullable.
#pragma warning disable CS8618 // Non-nullable field must contain a non-null value when exiting constructor. Consider adding the 'required' modifier or declaring as nullable.
public string Units { get; set; } // Units of measurement (e.g., g/dL, %)
#pragma warning restore CS8618 // Non-nullable field must contain a non-null value when exiting constructor. Consider adding the 'required' modifier or declaring as nullable.
#pragma warning disable CS8618 // Non-nullable field must contain a non-null value when exiting constructor. Consider adding the 'required' modifier or declaring as nullable.
public string AbnormalFlag { get; set; } // Indicates if the result is abnormal
#pragma warning restore CS8618 // Non-nullable field must contain a non-null value when exiting constructor. Consider adding the 'required' modifier or declaring as nullable.
#pragma warning disable CS8618 // Non-nullable field must contain a non-null value when exiting constructor. Consider adding the 'required' modifier or declaring as nullable.
public string ResultStatus { get; set; } // Status of the result (e.g., F for final)
public int ObservationId { get; internal set; }
#pragma warning restore CS8618 // Non-nullable field must contain a non-null value when exiting constructor. Consider adding the 'required' modifier or declaring as nullable.
}

14
DTO/PatientDTO.cs Normal file
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@ -0,0 +1,14 @@
public class PatientDTO
{
public int PatientId { get; set; }
#pragma warning disable CS8618
public string LastName { get; set; }
#pragma warning restore CS8618
#pragma warning disable CS8618
public string FirstName { get; set; }
#pragma warning restore CS8618
public DateTime DateOfBirth { get; set; }
#pragma warning disable CS8618
public string Gender { get; set; }
#pragma warning restore CS8618
}

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@ -5,9 +5,15 @@ using SimpleLIS.Models;
public class HL7DbContext : DbContext
{
#pragma warning disable CS8618
public DbSet<Message> Messages { get; set; }
#pragma warning restore CS8618
#pragma warning disable CS8618
public DbSet<Patient> Patients { get; set; }
#pragma warning restore CS8618
#pragma warning disable CS8618
public DbSet<Observation> Observations { get; set; }
#pragma warning restore CS8618
protected override void OnConfiguring(DbContextOptionsBuilder optionsBuilder)
{
@ -29,5 +35,17 @@ public class HL7DbContext : DbContext
.HasMany(m => m.Observations)
.WithOne(o => o.Message)
.HasForeignKey(o => o.MessageId);
modelBuilder.Entity<Message>()
.HasOne(m => m.Patient)
.WithMany(p => p.Messages)
.HasForeignKey(m => m.PatientId)
.OnDelete(DeleteBehavior.Cascade);
modelBuilder.Entity<Observation>()
.HasOne(o => o.Message)
.WithMany(m => m.Observations)
.HasForeignKey(o => o.MessageId)
.OnDelete(DeleteBehavior.Cascade);
}
}

18
MessageProfile.cs Normal file
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@ -0,0 +1,18 @@
using AutoMapper;
using SimpleLIS.DTO;
using SimpleLIS.Models;
namespace SimpleLIS;
public class MappingProfile : Profile
{
public MappingProfile()
{
CreateMap<MessageDTO, Message>();
CreateMap<Message, MessageDTO>();
CreateMap<ObservationDTO, Observation>();
CreateMap<Observation, ObservationDTO>();
CreateMap<PatientDTO, Patient>();
CreateMap<Patient, PatientDTO>();
}
}

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@ -3,15 +3,36 @@ namespace SimpleLIS.Models;
public class Message
{
public int MessageId { get; set; }
#pragma warning disable CS8618
public string ControlId { get; set; }
#pragma warning restore CS8618
#pragma warning disable CS8618
public string MessageType { get; set; }
#pragma warning restore CS8618
#pragma warning disable CS8618
public string SendingApp { get; set; }
#pragma warning restore CS8618
#pragma warning disable CS8618
public string SendingFacility { get; set; }
#pragma warning restore CS8618
#pragma warning disable CS8618
public string ReceivingApp { get; set; }
#pragma warning restore CS8618
#pragma warning disable CS8618
public string ReceivingFacility { get; set; }
#pragma warning restore CS8618
public DateTime Timestamp { get; set; }
#pragma warning disable CS8618
public string Version { get; set; }
#pragma warning restore CS8618
// Navigation Property
// Navigation Property for Observations
#pragma warning disable CS8618
public ICollection<Observation> Observations { get; set; }
#pragma warning restore CS8618
public int PatientId { get; set; }
#pragma warning disable CS8618
public Patient Patient { get; set; }
#pragma warning restore CS8618
}

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@ -4,12 +4,24 @@ public class Observation
{
public int ObservationId { get; set; }
public int MessageId { get; set; } // Foreign Key
#pragma warning disable CS8618
public string ObservationCode { get; set; }
#pragma warning restore CS8618
#pragma warning disable CS8618
public string ObservationValue { get; set; }
#pragma warning restore CS8618
#pragma warning disable CS8618
public string Units { get; set; }
#pragma warning restore CS8618
#pragma warning disable CS8618
public string AbnormalFlag { get; set; }
#pragma warning restore CS8618
#pragma warning disable CS8618
public string ResultStatus { get; set; }
#pragma warning restore CS8618
// Navigation Property
#pragma warning disable CS8618
public Message Message { get; set; }
#pragma warning restore CS8618
}

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@ -3,9 +3,21 @@ namespace SimpleLIS.Models;
public class Patient
{
public int PatientId { get; set; }
#pragma warning disable CS8618
public string HL7PatientId { get; set; }
#pragma warning restore CS8618
#pragma warning disable CS8618
public string LastName { get; set; }
#pragma warning restore CS8618
#pragma warning disable CS8618
public string FirstName { get; set; }
#pragma warning restore CS8618
public DateTime DateOfBirth { get; set; }
#pragma warning disable CS8618
public string Gender { get; set; }
#pragma warning restore CS8618
#pragma warning disable CS8618
public ICollection<Message> Messages { get; set; }
#pragma warning restore CS8618
}

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@ -1,16 +1,29 @@
using Microsoft.OpenApi.Models;
using SimpleLIS;
using SimpleLIS.Services;
var builder = WebApplication.CreateBuilder(args);
builder.Services.AddEndpointsApiExplorer();
builder.Services.AddSwaggerGen();
builder.Services.AddControllersWithViews();
builder.Services.AddAutoMapper(typeof(Program));
builder.Services.AddScoped<MessageService>();
builder.Services.AddScoped<ObservationService>();
builder.Services.AddScoped<PatientService>();
builder.Services.AddDbContext<HL7DbContext>();
builder.Services.AddSwaggerGen(options =>
{
options.SwaggerDoc("v1", new OpenApiInfo { Title = "SimpleLIS", Version = "v1" });
});
var app = builder.Build();
// Configure the HTTP request pipeline.
if (!app.Environment.IsDevelopment())
{
app.UseExceptionHandler("/Home/Error");
// The default HSTS value is 30 days. You may want to change this for production scenarios, see https://aka.ms/aspnetcore-hsts.
app.UseHsts();
}
@ -25,4 +38,10 @@ app.MapControllerRoute(
name: "default",
pattern: "{controller=Home}/{action=Index}/{id?}");
app.UseSwagger();
app.UseSwaggerUI(c =>
{
c.SwaggerEndpoint("/swagger/v1/swagger.json", "SimpleLIS V1");
});
app.Run();

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@ -0,0 +1,55 @@
using Microsoft.EntityFrameworkCore;
using SimpleLIS.Models;
namespace SimpleLIS.Services;
public class MessageService
{
private readonly HL7DbContext _context;
public MessageService(HL7DbContext context)
{
_context = context;
}
public async Task<Message> CreateMessageAsync(Message message)
{
_context.Messages.Add(message);
await _context.SaveChangesAsync();
return message;
}
public async Task<Message> GetMessageByIdAsync(int id)
{
#pragma warning disable CS8603
return await _context.Messages.Include(m => m.Observations).FirstOrDefaultAsync(m => m.MessageId == id);
#pragma warning restore CS8603
}
public async Task<IEnumerable<Message>> ListMessagesAsync()
{
return await _context.Messages.Include(m => m.Observations).ToListAsync();
}
public async Task<Message> UpdateMessageAsync(Message message)
{
_context.Messages.Update(message);
await _context.SaveChangesAsync();
return message;
}
public async Task<bool> DeleteMessageAsync(int id)
{
var message = await GetMessageByIdAsync(id);
if (message == null) return false;
_context.Messages.Remove(message);
await _context.SaveChangesAsync();
return true;
}
public async Task<bool> MessageExistsAsync(int id)
{
return await _context.Messages.AnyAsync(m => m.MessageId == id);
}
}

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@ -0,0 +1,55 @@
using Microsoft.EntityFrameworkCore;
using SimpleLIS.Models;
namespace SimpleLIS.Services;
public class ObservationService
{
private readonly HL7DbContext _context;
public ObservationService(HL7DbContext context)
{
_context = context;
}
public async Task<Observation> CreateObservationAsync(Observation observation)
{
_context.Observations.Add(observation);
await _context.SaveChangesAsync();
return observation;
}
public async Task<Observation> GetObservationByIdAsync(int id)
{
#pragma warning disable CS8603
return await _context.Observations.FirstOrDefaultAsync(o => o.ObservationId == id);
#pragma warning restore CS8603
}
public async Task<IEnumerable<Observation>> ListObservationsAsync()
{
return await _context.Observations.ToListAsync();
}
public async Task<Observation> UpdateObservationAsync(Observation observation)
{
_context.Observations.Update(observation);
await _context.SaveChangesAsync();
return observation;
}
public async Task<bool> DeleteObservationAsync(int id)
{
var observation = await GetObservationByIdAsync(id);
if (observation == null) return false;
_context.Observations.Remove(observation);
await _context.SaveChangesAsync();
return true;
}
public async Task<bool> ObservationExistsAsync(int id)
{
return await _context.Observations.AnyAsync(o => o.ObservationId == id);
}
}

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@ -0,0 +1,56 @@
using Microsoft.EntityFrameworkCore;
using SimpleLIS.Models;
namespace SimpleLIS.Services;
public class PatientService
{
private readonly HL7DbContext _context;
public PatientService(HL7DbContext context)
{
_context = context;
}
public async Task<Patient> CreatePatientAsync(Patient patient)
{
_context.Patients.Add(patient);
await _context.SaveChangesAsync();
return patient;
}
public async Task<Patient> GetPatientByIdAsync(int id)
{
#pragma warning disable CS8603
return await _context.Patients.FirstOrDefaultAsync(p => p.PatientId == id);
#pragma warning restore CS8603
}
public async Task<IEnumerable<Patient>> ListPatientsAsync()
{
return await _context.Patients.ToListAsync();
}
public async Task<Patient> UpdatePatientAsync(Patient patient)
{
_context.Patients.Update(patient);
await _context.SaveChangesAsync();
return patient;
}
public async Task<bool> DeletePatientAsync(int id)
{
var patient = await GetPatientByIdAsync(id);
if (patient == null) return false;
_context.Patients.Remove(patient);
await _context.SaveChangesAsync();
return true;
}
public async Task<bool> PatientExistsAsync(int id)
{
return await _context.Patients.AnyAsync(p => p.PatientId == id);
}
}

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@ -7,6 +7,7 @@
</PropertyGroup>
<ItemGroup>
<PackageReference Include="AutoMapper.Extensions.Microsoft.DependencyInjection" Version="12.0.1" />
<PackageReference Include="Microsoft.EntityFrameworkCore.Design" Version="8.0.11">
<IncludeAssets>runtime; build; native; contentfiles; analyzers; buildtransitive</IncludeAssets>
<PrivateAssets>all</PrivateAssets>

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@ -1,3 +0,0 @@
<div>
Hello, World
</div>